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Category: Translation
3.3. Protein synthesis, modification and degradation
| Name | Function |
| rrnA-16S | translation |
| rrnA-23S | translation |
| rrnA-5S | translation |
| rrnB-16S | translation |
| rrnB-23S | translation |
| rrnB-5S | translation |
| rrnD-16S | translation |
| rrnD-23S | translation |
| rrnD-5S | translation |
| rrnE-16S | translation |
| rrnE-23S | translation |
| rrnE-5S | translation |
| rrnG-16S | translation |
| rrnG-23S | translation |
| rrnG-5S | translation |
| rrnH-16S | translation |
| rrnH-23S | translation |
| rrnH-5S | translation |
| rrnI-16S | translation |
| rrnI-23S | translation |
| rrnI-5S | translation |
| rrnJ-16S | translation |
| rrnJ-23S | translation |
| rrnJ-5S | translation |
| rrnO-16S | translation |
| rrnO-23S | translation |
| rrnO-5S | translation |
| rrnW-16S | translation |
| rrnW-23S | translation |
| rrnW-5S | translation |
important publications
3.3.1.2. rRNA modification and maturation
| Name | Function |
| gidB | rRNA modification |
| ksgA | rRNA maturation |
| mrnC | maturation of 23S rRNA |
| rimM | maturation of 16S rRNA |
| rlmCD | 23S rRNA maturation |
| rluB | 23S rRNA modification |
| rnc | processing and degradation of RNA molecules |
| rnmV | 5S ribosomal RNA maturation |
| yacO | rRNA modification |
| ypuI | translation |
| yqeU | rRNA maturation |
| yqfG | 16S rRNA maturation |
| ysgA | unknown |
Important publications
3.3.1.3. rRNA modification and maturation/ based on similarity
| Name | Function |
| yabC | rRNA modification |
| yfjO | unknown |
| yhcT | RNA modification |
| yjbO | RNA modification |
| ylbH | unknown |
| yloM | rRNA modification |
| yloN | RNA modification |
| ylyB | RNA modification |
| ypsC | rRNA modification |
| yqxC | unknown |
| yrrK | 16S rRNA maturation |
| ytzG | 16S rRNA modification |
| ywbD | unknown |
| yydA | may be involved in maturation of 23S rRNA |
| Name | Function |
| ctc | [SW|translation] (under stress conditions) |
| rplA | translation |
| rplB | translation |
| rplC | translation |
| rplD | translation |
| rplE | translation |
| rplF | translation |
| rplGB | unknown |
| rplI | translation |
| rplJ | translation |
| rplK | translation |
| rplL | translation |
| rplM | translation |
| rplN | translation |
| rplO | translation |
| rplP | translation |
| rplQ | translation |
| rplR | translation |
| rplS | translation |
| rplT | translation |
| rplU | translation |
| rplV | translation |
| rplW | translation |
| rplX | translation |
| rpmA | translation |
| rpmB | translation |
| rpmC | translation |
| rpmD | translation |
| rpmE | translation |
| rpmEB | survival of salt stress |
| rpmF | translation |
| rpmGA | translation |
| rpmGB | translation |
| rpmGC | replaces L33 under conditions of zinc depletion |
| rpmH | translation |
| rpmI | translation |
| rpmJ | translation |
| rpsB | translation |
| rpsC | translation |
| rpsD | translation |
| rpsE | translation |
| rpsF | translation |
| rpsG | translation |
| rpsH | translation |
| rpsI | translation |
| rpsJ | translation |
| rpsK | translation |
| rpsL | translation |
| rpsM | translation |
| rpsN | translation |
| rpsNB | translation |
| rpsO | translation |
| rpsP | translation |
| rpsQ | translation |
| rpsR | translation |
| rpsS | translation |
| rpsT | translation |
| rpsU | translation |
3.3.1.5. Ribosomal protein/ based on similarity
| Name | Function |
| cpgA | ribosome assembly, coordination of peptidoglycan deposition in the cell wall, metabolite proofreading |
| cshA | RNA helicase |
| cshB | RNA helicase |
| era | ribosome assembly |
| obg | ribosome assembly, may be required to stimulate activity |
| prp | maturation of [protein|4626C659D6F1A81CCC94030F1CBAF7FEC3DE19CA|ribosomal protein L27] |
| rbgA | [category|SW 3.3.1.6|Ribosome assembly] |
| yaaA | assembly of the 50S subunit of the ribosome |
| yfmL | RNA helicase |
| yphC | ribosome assembly |
| yqeH | ribosome assembly |
| ysxC | ribosome assembly |
| Name | Function |
| trnA-Ala | translation |
| trnA-Ile | translation |
| trnB-Ala | translation |
| trnB-Arg | translation |
| trnB-Asn | translation |
| trnB-Asp | translation |
| trnB-Glu | translation |
| trnB-Gly1 | translation |
| trnB-Gly2 | translation |
| trnB-His | translation |
| trnB-Ile2 | translation |
| trnB-Leu1 | translation |
| trnB-Leu2 | translation |
| trnB-Lys | translation |
| trnB-Met1 | translation |
| trnB-Met2 | translation |
| trnB-Met3 | translation |
| trnB-Phe | translation |
| trnB-Pro | translation |
| trnB-Ser1 | translation |
| trnB-Ser2 | translation |
| trnB-Thr | translation |
| trnB-Val | translation |
| trnD-Asn | translation |
| trnD-Asp | translation |
| trnD-Cys | translation |
| trnD-Gln | translation |
| trnD-Glu | translation |
| trnD-Gly | translation |
| trnD-His | translation |
| trnD-Leu1 | translation |
| trnD-Leu2 | translation |
| trnD-Met | translation |
| trnD-Phe | translation |
| trnD-Ser | translation |
| trnD-Thr | translation |
| trnD-Trp | translation |
| trnD-Tyr | translation |
| trnD-Val | translation |
| trnE-Arg | translation |
| trnE-Asp | translation |
| trnE-Gly | translation |
| trnE-Met | translation |
| trnI-Ala | translation |
| trnI-Arg | translation |
| trnI-Asn | translation |
| trnI-Gly | translation |
| trnI-Pro | translation |
| trnI-Thr | translation |
| trnJ-Ala | translation |
| trnJ-Arg | translation |
| trnJ-Gly | translation |
| trnJ-Leu1 | translation |
| trnJ-Leu2 | translation |
| trnJ-Lys | translation |
| trnJ-Pro | translation |
| trnJ-Thr | translation |
| trnJ-Val | translation |
| trnO-Ala | translation |
| trnO-Ile | translation |
| trnQ-Arg | translation |
| trnS-Asn | translation |
| trnS-Gln | translation |
| trnS-Glu | translation |
| trnS-Leu1 | translation |
| trnS-Leu2 | translation |
| trnS-Lys | translation |
| trnS-Ser | translation |
| trnSL-Ala1 | translation |
| trnSL-Arg1 | translation |
| trnSL-Arg2 | translation |
| trnSL-Gln1 | translation |
| trnSL-Gln2 | translation |
| trnSL-Glu1 | translation |
| trnSL-Glu2 | translation |
| trnSL-Gly1 | translation |
| trnSL-Met1 | translation |
| trnSL-Ser1 | translation |
| trnSL-Thr1 | translation |
| trnSL-Tyr1 | translation |
| trnSL-Val1 | translation |
| trnSL-Val2 | translation |
| trnY-Asp | translation |
| trnY-Glu | translation |
| trnY-Lys | translation |
| trnY-Phe | translation |
important publications
3.3.1.8. tRNA modification and maturation
| Name | Function |
| cca | tRNA modification |
| cspR | translation |
| fmt | formylation of Met-tRNA(fMet) |
| folD | formylation of Met-tRNA(fMet) |
| folE | biosynthesis of folate and queuosine |
| folEB | biosynthesis of folate and queuosine |
| gidA | tRNA modification |
| miaA | tRNA modification |
| nifZ | biosynthesis of 4-thiouridine in tRNA |
| queA | tRNA modification |
| queC | tRNA modification |
| queD | tRNA modification |
| queE | tRNA modification |
| queF | tRNA modification |
| queG | synthesis of queuosine, tRNA modification |
| rnpA | cleavage of precursor sequences from the 5 ends of pre-tRNAs |
| rnpB | cleavage of precursor sequences from the 5 ends of pre-tRNAs |
| rnz | processing of CCA-less tRNA precursors |
| rph | 3-5 exoribonuclease |
| tgt | tRNA modification |
| thdF | tRNA modification |
| thiI | biosynthesis of 4-thiouridine in tRNA |
| tilS | tRNA modification, control of [gene|4E7B9426CED372AA8A321A147116A3A589FBF20C|ftsH] expression |
| tmcAL | acetylation of elongator tRNAMet |
| trmB | tRNA modification |
| trmD | tRNA modification |
| trmFO | tRNA modification |
| trmK | tRNA modification |
| trmN6 | tRNA modification |
| trmR | introduction of 5-methoxyuridine modification in tRNA (U34) |
| trmU | tRNA modification |
| truA | tRNA modification |
| truB | tRNA modification |
| tsaB | tRNA modification |
| tsaC | tRNA modification |
| tsaD | tRNA modification |
| tsaE | control of tRNA modification |
| yaaJ | tRNA modification |
| yacF | tRNA maturation |
| yfjN | tRNA modification |
| yloN | RNA modification |
| ymcB | tRNA maturation |
| yqeV | tRNA maturation |
| yrrN | introduction of 5-methoxyuridine modification in tRNA (U34) |
| yrrO | introduction of 5-methoxyuridine modification in tRNA (U34) |
| yrvM | tRNA modification |
| yrvO | tRNA modification |
Important publications
3.3.1.9. tRNA modification and maturation/ based on similarity
| Name | Function |
| yjdI | maturation of tRNA |
3.3.1.10. Aminoacyl-tRNA synthetases
| Name | Function |
| alaS | translation |
| argS | translation |
| asnS | translation |
| aspS | translation |
| cysS | translation |
| gatA | translation |
| gatB | translation |
| gatC | translation |
| gltX | translation |
| glyQ | translation |
| glyS | translation |
| hisS | translation |
| hisZ | translation |
| ileS | translation |
| leuS | translation |
| lysS | translation |
| metS | translation |
| pheS | translation |
| pheT | translation |
| proS | translation |
| serS | translation |
| thrS | translation |
| thrZ | translation |
| trpS | translation |
| tyrS | translation |
| tyrZ | translation |
| valS | translation |
| ytpR | unknown |
| Name | Function |
| efp | [category|SW 3.3.1|Translation] |
| frr | translation |
| fusA | translation |
| infA | translation |
| infB | translation |
| infC | translation |
| prfA | translation |
| prfB | translation |
| rbfA | translation |
| tsf | translation |
| tufA | translation |
| ylaG | unknown |
| Name | Function |
| brfA | resolution of stalled translation complexes |
| deaD | RNA helicase |
| defA | translation |
| dtd | prevention of misincorporation of D-amino acids into proteins |
| map | removal of N-terminal methionine from nascent proteins |
| mifM | control of yidC2 translation |
| rqcH | rescue of stalled ribosomes |
| rsfS | translation |
| smpB | trans-translation |
| spoVC | spore coat formation |
| ssrA | trans-translation |
| yflG | removal of N-terminal methionine from nascent proteins |
| yqeT | unknown |
3.3.1.13. Translation/ other/ based on similarity
| Name | Function |
| prmC | peptide release factor methylation |
| yabO | recycling of stalled ribosomes |
| ydiD | unknown |
| yjcK | unknown |
| ylxS | ribosome maturation |
| ynaD | unknown |
| yqeI | unknown |
3.3.1.14. Translation factor modification and maturation
| Name | Function |
| gsaB | biosynthesis of heme, modification of [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|Efp] |
| yaaO | control of [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|Efp] modification |
| yfkA | control of [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|Efp] modification |
| ymfI | modification of [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|Efp] |
| ynbB | modification of [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|Efp] |
| ywlG | control of [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|Efp] modification |
important publications